JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A4_chr4_185138266_185155382	0/0	t0010	3517	4	4	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/1	t0011	3519	2	0	0	0	0	1	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0012	3519	2	0	0	0	2	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0013	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0014	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0015	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0016	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0017	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0018	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0019	3516	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0020	3519	1	0	0	0	0	1	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0021	3519	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0022	3519	1	0	1	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0023	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0024	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0025	3519	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0026	3519	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0027	3519	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0028	3519	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0029	3519	1	0	1	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0030	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0031	3519	1	0	0	0	0	1	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0032	3519	1	0	1	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0033	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0034	3519	1	0	0	0	0	1	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	t0035	3519	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A51_chr9_37882604_37909127	1/1	t0001	278	432	82	83	210	11	44	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	t0002	278	5	5	0	0	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	t0003	278	2	2	0	0	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	t0004	278	1	0	0	0	1	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	t0005	278	1	0	1	0	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	t0006	278	1	1	0	0	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A52_chr18_31754584_31765880	1/0	t0001	404	396	92	70	190	14	29	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	t0002	404	7	1	1	1	2	2	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	t0003	404	1	0	0	0	0	1	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	t0004	404	1	1	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	t0005	404	1	0	0	1	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	t0006	404	1	0	1	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A53_chrX_104094214_104162009	0/0	t0001	5284	101	15	18	54	1	13	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0002	5284	82	4	18	47	5	8	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	1/1	t0003	5284	49	14	5	23	3	2	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0004	5285	11	10	1	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0005	5285	9	1	2	0	3	3	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0006	5284	6	6	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0007	5284	6	6	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0008	5284	4	0	2	0	0	2	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0009	5285	2	2	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0010	5285	2	0	1	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0011	5285	2	2	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0012	5283	2	2	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009