JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A53_chrX_104094214_104162009	0/0	t0013	5286	2	2	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0014	5283	1	0	1	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0015	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0016	5282	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0017	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0018	5285	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0019	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0020	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0021	5283	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0022	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0023	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0024	5284	1	0	0	0	1	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0025	5282	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0026	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0027	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0028	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0029	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0030	5284	1	0	0	1	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0031	5284	1	0	1	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0032	5284	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	t0033	5285	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A5_chrX_119463444_119476396	1/1	t0001	411	315	73	59	138	11	32	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0002	411	2	2	0	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0003	411	1	0	1	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0004	411	1	0	0	1	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0005	407	1	1	0	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0006	410	1	0	0	1	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0007	411	1	0	0	0	0	1	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0008	413	1	0	0	1	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	t0009	411	1	0	0	0	0	1	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A6_chrX_1381152_1397113	1/1	t0001	555	178	47	34	76	6	13	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0002	555	5	4	1	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0003	555	2	0	1	0	1	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0004	555	2	2	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0005	555	2	0	2	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0006	557	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0007	555	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0008	553	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0009	556	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0010	555	1	0	1	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0011	557	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	t0012	555	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC26A11_chr17_80215427_80258500	0/1	t0001	1068	143	6	24	82	11	19	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0002	1070	87	2	28	43	1	13	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	1/0	t0003	1068	67	46	10	3	2	5	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0004	1069	17	10	2	2	0	3	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0005	1069	11	4	5	1	0	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0006	1068	8	5	1	2	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0007	1068	6	6	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0008	1069	6	6	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500