JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC26A11_chr17_80215427_80258500	0/0	t0009	1068	3	3	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0010	1068	2	0	2	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0011	1068	2	2	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0012	1069	2	0	0	0	0	2	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0013	1070	2	0	2	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0014	1068	2	1	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0015	1070	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0016	1070	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0017	1068	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0018	1068	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0019	1068	1	0	0	0	0	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0020	1068	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0021	1068	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	t0022	1070	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A1_chr4_982657_998404	0/1	t0001	1308	409	85	65	199	15	44	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	1/0	t0002	1308	16	0	13	0	2	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0003	1308	5	5	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0004	1308	4	4	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0005	1308	3	2	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0006	1308	2	1	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0007	1308	2	0	0	2	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0008	1308	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0009	1308	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0010	1308	1	0	0	0	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0011	1308	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0012	1308	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0013	1308	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0014	1308	1	0	0	0	1	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0015	1308	1	0	0	0	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	t0016	1308	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A2_chr5_149955758_149992400	0/1	t0001	5835	124	14	25	61	6	17	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0002	5834	94	15	14	48	2	15	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0003	5834	50	8	17	22	2	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0004	5835	11	5	3	2	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0005	5835	11	9	2	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0006	5835	9	9	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0007	5835	6	5	1	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0008	5834	5	5	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0009	5835	4	4	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0010	5835	3	3	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0011	5834	3	3	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0012	5834	3	0	0	3	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	1/0	t0013	5835	3	0	1	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0014	5835	3	1	1	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0015	5834	2	0	1	0	1	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0016	5834	2	2	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0017	5835	2	0	2	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0018	5835	2	0	0	2	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0019	5835	2	0	1	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0020	5834	2	0	0	0	0	2	copy fasta	SLC26A2	chr5	149955758	149992400