JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC26A2_chr5_149955758_149992400	0/0	t0021	5835	2	0	0	1	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0022	5834	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0023	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0024	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0025	5834	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0026	5834	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0027	5834	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0028	5835	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0029	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0030	5835	1	0	0	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0031	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0032	5834	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0033	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0034	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0035	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0036	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0037	5835	1	0	0	0	1	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0038	5835	1	0	0	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0039	5814	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0040	5835	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0041	5836	1	1	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	t0042	5835	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A3_chr7_107760469_107808223	1/1	t0001	588	433	96	74	197	16	48	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	t0002	588	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	t0003	588	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	t0004	588	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A4_chr7_107655828_107722809	0/0	t0001	2393	155	31	27	77	6	14	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0002	2392	76	1	17	42	4	12	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	1/0	t0003	2395	39	17	11	1	2	7	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0004	2393	15	2	2	11	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0005	2394	13	2	4	4	2	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0006	2392	11	2	4	3	1	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0007	2392	7	7	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0008	2396	7	4	2	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0009	2391	5	5	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0010	2391	4	4	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0011	2392	4	0	0	4	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0012	2395	3	1	0	1	1	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0013	2393	3	3	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0014	2393	3	3	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0015	2393	2	0	0	2	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0016	2392	2	1	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0017	2395	2	0	2	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0018	2393	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0019	2395	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0020	2392	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0021	2395	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0022	2393	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0023	2393	1	0	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0024	2396	1	0	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809