JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC26A4_chr7_107655828_107722809	0/0	t0025	2395	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0026	2393	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0027	2395	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0028	2380	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/1	t0029	2395	1	0	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0030	2395	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	t0031	2393	1	0	0	0	0	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A5_chr7_103369207_103451207	1/1	t0001	485	339	86	60	146	12	33	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	t0002	485	2	0	0	0	2	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	t0003	485	1	0	0	0	0	1	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A6_chr3_48620723_48640461	1/1	t0001	332	276	87	42	105	12	28	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	t0002	332	1	0	1	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	t0003	332	1	1	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	t0004	332	1	0	1	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	t0005	332	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A7_chr8_91244319_91403155	1/0	t0001	3267	142	39	43	36	5	18	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0002	3267	19	6	6	3	1	3	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0003	3267	7	7	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0004	3267	6	2	2	0	2	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0005	3267	5	4	1	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0006	3267	4	4	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0007	3267	3	0	0	3	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0008	3267	3	0	2	0	0	1	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0009	3267	3	3	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0010	3267	3	3	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0011	3266	2	2	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0012	3267	2	1	1	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0013	3267	1	0	0	1	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0014	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0015	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/1	t0016	3267	1	0	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0017	3267	1	0	1	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0018	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0019	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0020	3267	1	0	0	1	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0021	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0022	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	t0023	3267	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A8_chr6_35938516_36029641	1/1	t0001	525	182	59	39	56	11	15	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	t0002	525	120	29	23	58	1	9	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	t0003	525	2	0	0	2	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	t0004	525	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	t0005	525	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A9_chr1_205908052_205948456	1/1	t0001	2416	232	27	58	101	13	31	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0002	2416	48	0	0	45	0	3	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0003	2416	14	10	4	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0004	2416	13	0	4	3	0	6	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0005	2416	12	10	2	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0006	2416	11	0	0	11	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0007	2416	11	11	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456