JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC26A9_chr1_205908052_205948456	0/0	t0008	2416	7	0	6	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0009	2416	5	5	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0010	2416	4	2	2	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0011	2416	3	3	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0012	2416	3	3	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0013	2416	3	0	0	3	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0014	2416	3	3	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0015	2416	2	1	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0016	2416	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0017	2416	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0018	2416	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0019	2416	2	0	0	1	1	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0020	2416	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0021	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0022	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0023	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0024	2416	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0025	2416	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0026	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0027	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0028	2416	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0029	2416	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0030	2416	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0031	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0032	2416	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0033	2416	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0034	2416	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0035	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0036	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0037	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0038	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	t0039	2416	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC27A1_chr19_17465524_17511168	1/1	t0001	1574	138	13	26	69	7	21	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0002	1574	62	25	17	17	0	3	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0003	1574	60	7	16	27	3	7	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0004	1574	36	2	9	15	1	9	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0005	1574	10	7	3	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0006	1574	6	6	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0007	1574	4	0	0	4	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0008	1574	3	2	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0009	1574	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0010	1574	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0011	1574	2	1	1	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0012	1574	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0013	1574	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0014	1574	2	0	1	0	1	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0015	1574	2	0	0	2	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0016	1574	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0017	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0018	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168