JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC27A1_chr19_17465524_17511168	0/0	t0019	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0020	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0021	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0022	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0023	1574	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0024	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0025	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0026	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0027	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0028	1574	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0029	1574	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0030	1574	1	1	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	t0031	1574	1	0	1	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A2_chr15_50177196_50241385	1/1	t0001	522	319	69	56	148	11	33	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0002	522	32	13	10	3	5	1	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0003	522	3	3	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0004	522	2	0	2	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0005	522	2	0	0	0	0	2	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0006	522	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0007	522	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0008	522	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	t0009	522	1	0	0	1	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A3_chr1_153770407_153785157	0/1	t0001	247	449	98	84	202	16	48	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A4_chr9_128335527_128366470	0/0	t0001	1298	167	66	14	71	3	13	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	1/1	t0002	1298	151	11	20	79	12	27	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0003	1298	4	2	2	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0004	1298	4	0	4	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0005	1298	3	0	0	3	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0006	1298	2	2	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0007	1298	2	0	0	2	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0008	1298	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0009	1298	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0010	1298	1	0	1	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0011	1298	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0012	1298	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0013	1298	1	0	0	0	1	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0014	1298	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0015	1298	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0016	1298	1	0	1	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0017	1298	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	t0018	1298	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A5_chr19_58493333_58516992	1/1	t0001	220	423	96	78	185	18	44	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	t0002	220	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A6_chr5_128960488_129038635	0/0	t0001	1004	234	55	37	117	4	21	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0002	1004	48	9	16	13	2	8	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0003	1004	20	4	3	7	0	6	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0004	1004	19	7	4	1	3	4	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	1/1	t0005	1004	15	6	3	0	2	2	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0006	1004	7	5	1	0	1	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0007	1004	3	3	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635