JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC27A6_chr5_128960488_129038635	0/0	t0008	1004	2	2	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0009	1004	2	1	1	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0010	1004	1	0	0	1	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0011	1004	1	0	0	0	0	1	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0012	1004	1	0	1	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0013	1004	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0014	1004	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0015	1004	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0016	1004	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	t0017	1004	1	0	0	1	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC28A1_chr15_84879662_84950798	0/1	t0001	821	265	59	58	95	14	38	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0002	821	70	5	1	62	0	2	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	1/0	t0003	821	27	9	6	9	2	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0004	821	9	9	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0005	821	6	2	4	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0006	821	5	5	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0007	821	4	0	0	4	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0008	821	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0009	821	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0010	821	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0011	821	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0012	821	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0013	821	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0014	821	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0015	821	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	t0016	821	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A2_chr15_45247234_45282846	1/0	t0001	2395	94	15	16	48	1	13	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/1	t0002	2695	41	5	20	9	2	4	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0003	2389	37	3	5	20	0	9	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0004	2695	26	22	3	0	0	1	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0005	2388	21	19	2	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0006	2395	14	5	7	0	1	1	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0007	2395	10	0	0	10	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0008	2696	8	1	2	2	3	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0009	2396	7	0	1	6	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0010	2395	6	0	0	6	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0011	2696	5	5	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0012	2696	4	1	0	1	0	2	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0013	2394	4	1	0	3	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0014	2695	3	0	0	3	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0015	2388	2	2	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0016	2695	2	0	0	0	0	2	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0017	2390	2	0	1	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0018	2395	2	1	0	0	0	1	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0019	2387	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0020	2696	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0021	2698	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0022	2695	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0023	2696	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0024	2696	1	0	0	0	0	1	copy fasta	SLC28A2	chr15	45247234	45282846