JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC28A2_chr15_45247234_45282846	0/0	t0025	2695	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0026	2695	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0027	2696	1	0	0	0	0	1	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0028	2697	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0029	2396	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0030	2395	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0031	2395	1	0	0	0	0	1	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0032	2394	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0033	2394	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	t0034	2389	1	0	0	0	1	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A3_chr9_84270457_84345758	1/0	t0001	2887	141	27	19	68	8	18	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/1	t0002	2895	70	24	20	19	1	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0003	2887	55	0	4	48	1	2	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0004	2887	26	4	3	14	0	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0005	2887	17	8	5	0	0	4	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0006	2887	17	0	7	2	4	4	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0007	2887	9	1	0	8	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0008	2891	8	7	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0009	2887	4	4	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0010	2887	3	3	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0011	2887	3	2	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0012	2887	2	2	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0013	2887	2	0	0	2	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0014	2887	1	0	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0015	2887	1	0	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0016	2887	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0017	2891	1	0	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0018	2887	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0019	2887	1	0	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0020	2887	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0021	2887	1	1	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	t0022	2891	1	1	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC29A1_chr6_44218595_44239142	1/1	t0001	713	370	90	68	149	14	47	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	t0002	713	46	1	9	35	0	1	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	t0003	713	5	4	1	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	t0004	713	2	0	0	2	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	t0005	713	2	0	0	0	2	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	t0006	713	1	1	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A2_chr11_66357521_66376760	0/1	t0001	1085	196	11	41	101	12	30	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0002	1085	171	58	21	80	6	6	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	1/0	t0003	1085	14	12	1	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0004	1085	7	6	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0005	1085	2	2	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0006	1085	2	0	2	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0007	1085	2	1	1	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0008	1085	1	0	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0009	1085	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0010	1085	1	1	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	t0011	1085	1	1	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A3_chr10_71314259_71368385	1/0	t0001	829	346	75	64	163	11	32	copy fasta	SLC29A3	chr10	71314259	71368385