JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC29A3_chr10_71314259_71368385	0/1	t0002	829	41	4	9	16	3	8	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0003	829	4	4	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0004	829	4	4	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0005	829	3	3	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0006	829	2	2	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0007	829	2	0	0	2	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0008	829	2	0	0	2	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0009	829	2	1	0	0	0	1	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0010	829	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0011	829	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0012	829	1	0	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	t0013	829	1	0	0	0	0	1	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A4_chr7_5277943_5311912	0/0	t0001	4121	22	0	0	22	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0002	4120	22	1	8	11	1	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0003	4122	19	0	2	13	0	4	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0004	4121	16	4	1	8	1	2	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0005	4124	15	0	5	1	5	4	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0006	4119	14	1	5	1	3	4	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0007	4121	12	2	4	5	1	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0008	4126	6	0	5	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0009	4122	6	0	0	6	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0010	4123	6	0	0	6	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0011	4125	5	0	3	2	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0012	4117	5	0	3	0	1	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0013	4120	5	0	2	1	0	2	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0014	4123	5	0	1	4	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0015	4120	5	5	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0016	4121	5	4	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0017	4122	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0018	4124	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0019	4122	4	0	0	4	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0020	4118	4	0	2	0	0	2	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0021	4121	4	1	3	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0022	4122	4	0	0	4	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0023	4122	4	0	0	0	0	4	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0024	4121	4	0	1	3	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0025	4122	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0026	4118	3	0	0	3	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0027	4122	3	0	2	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0028	4109	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0029	4120	3	0	0	3	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0030	4121	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0031	4123	3	1	1	0	1	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0032	4127	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0033	4123	3	1	0	0	0	2	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0034	4121	3	0	1	2	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0035	4121	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0036	4121	3	0	3	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0037	4121	3	2	0	0	1	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0038	4121	3	2	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912