Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL3_chr19_44743708_44765044	0/0	t0004	509	28	16	6	2	0	4	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0005	515	25	7	4	13	0	1	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0006	512	17	8	1	6	1	1	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0007	510	2	2	0	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0008	510	2	2	0	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0009	514	1	0	1	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0010	513	1	0	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL6B_chr17_7018050_7034644	0/0	t0001	2140	229	69	30	102	8	20	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/1	t0002	2136	48	1	19	22	1	4	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0003	2138	32	3	2	15	2	10	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	1/0	t0004	2088	15	11	1	1	0	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0005	2140	10	3	3	0	0	4	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0006	2140	5	5	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0007	2140	4	0	2	0	1	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0008	2140	3	3	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0009	2140	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0010	2138	1	0	0	1	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0011	2140	1	0	0	1	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0012	2136	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0013	2140	1	1	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0014	2140	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0015	2140	1	0	0	1	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0016	2140	1	0	0	1	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0017	2140	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	t0018	2136	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6_chr3_187716381_187750468	1/0	t0001	1186	211	82	36	72	10	10	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0002	1188	181	5	35	112	6	23	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0003	1188	4	0	3	0	0	1	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/1	t0004	1186	2	0	0	0	0	1	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0005	1188	2	0	2	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0006	1188	1	0	0	1	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0007	1188	1	0	0	0	0	1	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0008	1186	1	1	0	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	t0009	1188	1	0	0	1	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL7A_chr12_122016884_122067044	0/0	t0001	3094	49	18	5	24	1	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0002	3092	35	3	15	6	2	9	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	1/0	t0003	3090	26	4	12	4	0	5	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0004	3090	25	0	2	19	2	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0005	3092	18	0	5	8	4	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0006	3090	15	0	2	12	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0007	3090	9	0	0	9	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0008	3094	8	6	0	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0009	3093	6	1	0	3	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0010	3090	6	0	2	2	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0011	3094	6	0	3	3	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0012	3090	5	0	1	3	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0013	3090	5	0	2	2	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0014	3094	5	0	2	1	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0015	3090	4	0	1	1	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0016	3091	4	4	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044