JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC29A4_chr7_5277943_5311912	0/0	t0139	4121	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0140	4120	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0141	4119	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0142	4119	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0143	4122	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0144	4124	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0145	4123	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0146	4121	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0147	4124	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0148	4126	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0149	4124	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0150	4126	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0151	4118	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0152	4119	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0153	4125	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0154	4126	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0155	4127	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0156	4123	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0157	4122	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0158	4124	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	1/0	t0159	4122	1	0	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0160	4123	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0161	4125	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0162	4124	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0163	4124	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0164	4125	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0165	4126	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0166	4121	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0167	4121	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0168	4121	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0169	4124	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0170	4120	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0171	4120	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0172	4123	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0173	4124	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0174	4122	1	0	0	0	1	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0175	4118	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0176	4121	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0177	4122	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0178	4124	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0179	4124	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0180	4123	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0181	4122	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0182	4121	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0183	4122	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0184	4123	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0185	4118	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0186	4124	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0187	4125	1	0	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	t0188	4122	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912