JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A10_chr20_46704649_46741347	1/0	t0001	2602	139	53	23	41	1	20	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/1	t0002	2601	118	5	30	61	9	12	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0003	2603	46	1	5	36	1	3	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0004	2601	10	2	0	8	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0005	2602	8	0	0	8	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0006	2601	6	0	0	6	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0007	2601	4	3	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0008	2602	4	0	4	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0009	2585	3	3	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0010	2601	3	2	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0011	2601	3	0	0	3	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0012	2602	2	2	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0013	2601	2	2	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0014	2602	2	0	0	0	2	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0015	2602	2	0	1	0	1	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0016	2601	1	0	0	0	0	1	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0017	2602	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0018	2602	1	0	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0019	2613	1	0	0	1	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0020	2601	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0021	2602	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0022	2601	1	0	0	1	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0023	2602	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0024	2602	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	t0025	2601	1	0	0	1	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A11_chr22_23852875_23891312	0/1	t0001	1590	121	16	22	60	3	19	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0002	1589	109	10	22	53	2	22	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0003	1591	58	24	9	21	0	4	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0004	1590	41	3	16	15	5	2	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0005	1590	19	14	2	3	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0006	1592	9	2	0	7	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0007	1583	7	7	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0008	1587	7	7	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0009	1585	6	5	1	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0010	1590	5	1	3	0	1	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0011	1589	4	0	1	3	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0012	1590	4	0	0	4	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0013	1586	3	0	0	3	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0014	1589	3	0	0	2	0	1	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0015	1591	2	1	1	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0016	1591	2	0	0	2	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0017	1585	2	0	0	0	0	2	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0018	1589	1	0	1	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0019	1590	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0020	1589	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0021	1591	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0022	1591	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0023	1590	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0024	1589	1	0	0	0	1	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0025	1589	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312