JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A11_chr22_23852875_23891312	0/0	t0026	1589	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0027	1589	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0028	1586	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0029	1592	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	t0030	1590	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A12_chr6_133982581_134057624	0/0	t0001	3719	128	10	23	78	3	14	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/1	t0002	3717	64	3	22	25	5	8	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0003	3717	18	17	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0004	3717	14	1	2	10	1	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0005	3719	11	11	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0006	3723	9	9	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	1/0	t0007	3719	7	0	3	1	0	2	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0008	3717	4	0	2	0	1	1	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0009	3719	4	0	0	4	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0010	3719	4	0	0	1	0	3	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0011	3721	4	3	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0012	3757	4	0	2	2	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0013	3723	4	0	3	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0014	3716	3	0	0	3	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0015	3717	3	1	1	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0016	3719	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0017	3717	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0018	3725	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0019	3717	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0020	3719	2	0	0	2	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0021	3755	2	1	0	0	0	1	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0022	3753	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0023	3717	2	0	2	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0024	3715	2	2	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0025	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0026	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0027	3725	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0028	3723	1	0	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0029	3727	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0030	3719	1	0	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0031	3719	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0032	3717	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0033	3719	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0034	3719	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0035	3716	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0036	3719	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0037	3719	1	0	0	0	0	1	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0038	3727	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0039	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0040	3719	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0041	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0042	3719	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0043	3757	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0044	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0045	3729	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624