JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A12_chr6_133982581_134057624	0/0	t0046	3745	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0047	3759	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0048	3715	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0049	3717	1	0	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0050	3719	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0051	3717	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0052	3735	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0053	3715	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0054	3719	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0055	3719	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0056	3739	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0057	3739	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0058	3745	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0059	3735	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0060	4054	1	0	1	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0061	3719	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0062	3743	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	t0063	3745	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A13_chr12_39750025_40111081	0/1	t0001	5276	72	10	9	43	2	7	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0002	5275	57	5	8	41	0	3	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0003	5276	24	1	12	5	1	5	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0004	5276	12	2	4	3	1	2	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0005	5275	12	12	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0006	5276	7	6	1	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0007	5276	4	1	1	0	0	2	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0008	5276	3	3	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0009	5275	2	2	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0010	5275	2	0	2	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0011	5276	2	1	1	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0012	5276	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0013	5276	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0014	5276	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0015	5275	1	0	0	1	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	1/0	t0016	5275	1	0	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0017	5276	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0018	5276	1	0	1	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0019	5275	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0020	5276	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0021	5276	1	0	0	0	0	1	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0022	5275	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0023	5275	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0024	5275	1	0	0	1	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0025	5275	1	0	0	1	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0026	5275	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0027	5276	1	0	1	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	t0028	5275	1	0	0	1	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A14_chr12_7807514_7877915	0/0	t0001	1969	114	47	15	35	4	13	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0002	1969	81	5	13	46	4	13	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0003	1968	61	3	25	19	6	8	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0004	1969	30	6	5	18	0	1	copy fasta	SLC2A14	chr12	7807514	7877915