JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A14_chr12_7807514_7877915	0/1	t0005	1968	27	9	5	11	0	1	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0006	1968	12	0	0	12	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0007	1967	5	5	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0008	1969	4	4	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0009	1967	4	4	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0010	1969	3	2	1	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0011	1968	2	2	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0012	1969	1	0	0	1	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	1/0	t0013	1969	1	0	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0014	1969	1	0	0	1	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0015	1968	1	0	0	1	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0016	1969	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0017	1969	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	t0018	1969	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A1_chr1_42920353_42963868	1/1	t0001	1906	191	20	36	99	6	28	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0002	1906	87	33	14	31	0	9	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0003	1906	42	10	13	12	0	7	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0004	1906	40	8	3	26	2	1	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0005	1906	11	6	0	5	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0006	1906	7	6	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0007	1906	7	1	2	4	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0008	1906	2	1	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0009	1906	2	2	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0010	1906	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0011	1906	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0012	1906	1	0	0	0	0	1	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0013	1906	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0014	1906	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0015	1906	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	t0016	1906	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A2_chr3_170991347_171031720	1/1	t0001	1607	235	45	34	130	5	19	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0002	1607	60	32	10	6	3	9	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0003	1607	7	7	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0004	1607	5	0	5	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0005	1601	5	5	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0006	1607	2	0	2	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0007	1607	2	2	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0008	1607	2	2	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0009	1607	2	1	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0010	1607	1	0	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0011	1607	1	0	0	0	0	1	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0012	1607	1	1	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0013	1607	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0014	1607	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0015	1607	1	0	0	0	0	1	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0016	1607	1	0	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	t0017	1607	1	1	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A3_chr12_7914230_7941187	0/1	t0001	2336	222	23	29	142	6	21	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0002	2336	97	14	19	42	6	16	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0003	2337	20	4	9	4	1	2	copy fasta	SLC2A3	chr12	7914230	7941187