JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A3_chr12_7914230_7941187	0/0	t0004	2337	17	14	3	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0005	2336	11	8	3	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0006	2336	10	8	2	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0007	2336	7	7	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	1/0	t0008	2337	4	3	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0009	2336	2	0	2	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0010	2337	2	0	0	2	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0011	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0012	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0013	2336	1	0	0	0	1	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0014	2336	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0015	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0016	2337	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0017	2337	1	0	1	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0018	2336	1	0	1	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0019	2336	1	0	1	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0020	2363	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0021	2336	1	0	1	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0022	2336	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0023	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0024	2337	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0025	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0026	2336	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0027	2337	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0028	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0029	2183	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0030	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0031	2336	1	0	1	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0032	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0033	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0034	2337	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0035	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0036	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0037	2336	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	t0038	2336	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A4RG_chr20_63734776_63749050	0/0	t0001	1198	205	47	60	61	13	24	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0002	1198	111	1	10	88	2	10	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	1/1	t0003	1198	51	19	11	7	3	9	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0004	1198	12	0	0	11	0	1	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0005	1197	9	9	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0006	1197	7	7	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0007	1194	6	6	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0008	1197	2	1	1	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0009	1197	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0010	1198	1	0	0	0	0	1	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0011	1198	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0012	1198	1	0	0	1	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0013	1198	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0014	1198	1	0	0	1	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0015	1198	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050