JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A4RG_chr20_63734776_63749050	0/0	t0016	1198	1	0	0	0	0	1	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0017	1198	1	0	0	0	0	1	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0018	1198	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0019	1197	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0020	1198	1	0	0	1	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	t0021	1198	1	0	0	0	0	1	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4_chr17_7276718_7293257	0/0	t0001	1846	120	19	28	50	7	16	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/1	t0002	1845	109	29	22	48	2	7	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	1/0	t0003	1846	83	11	7	59	1	4	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0004	1845	25	0	7	10	3	5	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0005	1847	17	2	2	13	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0006	1846	16	1	9	2	2	2	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0007	1845	14	6	1	6	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0008	1847	6	1	1	3	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0009	1846	6	0	2	3	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0010	1845	4	3	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0011	1846	3	0	0	3	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0012	1845	3	3	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0013	1846	3	3	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0014	1845	3	2	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0015	1845	3	3	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0016	1845	2	0	0	2	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0017	1845	2	2	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0018	1847	2	1	0	0	1	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0019	1846	2	2	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0020	1846	2	2	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0021	1846	1	0	0	0	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0022	1845	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0023	1846	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0024	1846	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0025	1846	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0026	1846	1	0	0	0	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0027	1847	1	0	0	0	0	1	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0028	1846	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0029	1845	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0030	1845	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0031	1845	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0032	1845	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0033	1845	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0034	1845	1	0	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	t0035	1847	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A5_chr1_9030106_9074635	0/0	t0001	2581	79	28	13	31	1	6	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0002	2580	52	2	20	15	3	12	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	1/0	t0003	2580	47	9	10	8	6	13	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/1	t0004	2581	46	8	6	25	4	2	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0005	2579	18	0	6	10	0	2	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0006	2581	11	1	0	9	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0007	2579	8	0	1	2	1	4	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0008	2580	8	0	0	7	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0009	2581	7	0	0	5	1	1	copy fasta	SLC2A5	chr1	9030106	9074635