JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A5_chr1_9030106_9074635	0/0	t0010	2580	5	5	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0011	2576	4	0	0	3	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0012	2581	4	4	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0013	2581	3	2	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0014	2580	3	1	0	1	1	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0015	2581	3	3	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0016	2580	3	2	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0017	2580	3	0	0	3	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0018	2580	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0019	2581	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0020	2582	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0021	2580	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0022	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0023	2579	1	0	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0024	2580	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0025	2581	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0026	2581	1	0	0	0	1	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0027	2580	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0028	2580	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0029	2580	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0030	2581	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0031	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0032	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0033	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0034	2582	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0035	2580	1	0	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0036	2576	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0037	2580	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0038	2580	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0039	2580	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0040	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0041	2581	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0042	2581	1	0	0	0	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0043	2581	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0044	2582	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	t0045	2581	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A6_chr9_133466094_133484099	1/1	t0001	968	236	62	33	104	12	23	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0002	970	81	2	29	33	2	15	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0003	967	22	0	1	21	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0004	968	20	10	6	1	2	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0005	969	15	3	5	5	1	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0006	971	9	2	1	5	0	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0007	968	7	0	0	7	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0008	968	7	2	2	0	1	2	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0009	968	6	0	0	6	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0010	968	5	0	0	5	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0011	968	3	3	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0012	968	3	3	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0013	968	3	0	0	3	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0014	968	3	0	3	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099