Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL7A_chr12_122016884_122067044	0/0	t0017	3095	4	0	0	4	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0018	3096	4	3	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0019	3090	4	0	1	3	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0020	3088	4	0	0	0	0	4	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0021	3088	3	1	0	0	1	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0022	3092	3	3	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0023	3092	3	1	2	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0024	3092	3	1	1	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0025	3094	3	1	0	0	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0026	3096	3	1	1	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0027	3090	3	0	0	3	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/1	t0028	3092	3	2	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0029	3086	3	0	0	3	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0030	3090	3	0	0	3	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0031	3090	3	0	2	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0032	3092	3	0	1	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0033	3096	3	0	1	1	1	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0034	3096	3	0	2	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0035	3092	2	0	0	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0036	3092	2	0	0	0	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0037	3094	2	0	0	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0038	3094	2	0	0	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0039	3094	2	2	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0040	3095	2	2	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0041	3093	2	2	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0042	3097	2	1	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0043	3098	2	1	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0044	3086	2	0	1	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0045	3091	2	0	0	2	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0046	3092	2	0	1	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0047	3100	2	0	2	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0048	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0049	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0050	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0051	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0052	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0053	3091	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0054	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0055	3091	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0056	3090	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0057	3091	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0058	3090	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0059	3092	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0060	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0061	3093	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0062	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0063	3092	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0064	3092	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0065	3093	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0066	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044