JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC2A6_chr9_133466094_133484099	0/0	t0015	968	2	0	0	2	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0016	968	2	2	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0017	968	2	2	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0018	967	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0019	970	1	0	0	0	0	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0020	968	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0021	969	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0022	968	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0023	968	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0024	969	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0025	968	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0026	967	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0027	969	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0028	968	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	t0029	968	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A7_chr1_8997973_9031423	1/1	t0001	406	291	63	56	128	10	32	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0002	406	65	11	7	38	2	7	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0003	406	38	0	9	22	2	5	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0004	406	27	3	5	11	4	4	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0005	406	16	15	1	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0006	406	2	2	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0007	406	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0008	406	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	t0009	406	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A8_chr9_127392169_127412898	1/0	t0001	712	208	41	39	95	9	23	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0002	708	74	13	19	18	6	18	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/1	t0003	712	71	7	18	38	2	5	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0004	712	15	0	0	15	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0005	711	12	12	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0006	713	11	10	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0007	708	10	0	0	10	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0008	713	3	2	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0009	712	2	2	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0010	711	2	2	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0011	712	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0012	712	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0013	712	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0014	711	1	0	0	0	0	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0015	712	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0016	712	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0017	712	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0018	712	1	0	0	0	1	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0019	708	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	t0020	708	1	0	0	0	0	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A9_chr4_9821224_10026497	1/1	t0001	242	333	80	55	148	14	34	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	t0002	242	3	2	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC30A10_chr1_219905445_219933557	0/0	t0001	5134	34	0	3	22	2	7	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0002	5123	23	8	7	4	1	3	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0003	5140	16	0	4	12	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0004	5122	14	12	2	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557