JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A10_chr1_219905445_219933557	0/0	t0055	5136	2	0	0	2	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0056	5137	2	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0057	5134	2	0	2	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0058	5119	2	2	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0059	5127	2	2	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0060	5116	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0061	5138	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0062	5151	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0063	5123	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	1/0	t0064	5122	1	0	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0065	5125	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0066	5159	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0067	5120	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0068	5121	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0069	5127	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0070	5123	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0071	5117	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0072	5109	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0073	5121	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0074	5140	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0075	5137	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0076	5144	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0077	5123	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0078	5132	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0079	5123	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0080	5134	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0081	5139	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0082	5138	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0083	5139	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0084	5137	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0085	5141	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0086	5157	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0087	5159	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0088	5138	1	0	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0089	5125	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0090	5119	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0091	5159	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0092	5156	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0093	5136	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0094	5161	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0095	5160	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0096	5165	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0097	5161	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0098	5157	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0099	5156	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0100	5156	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0101	5154	1	0	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0102	5139	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0103	5138	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0104	5130	1	0	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557