JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLC30A10_chr1_219905445_219933557	0/0	t0105	5161	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0106	5158	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0107	5157	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0108	5153	1	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0109	5144	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0110	5114	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0111	5153	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0112	5151	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0113	5148	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0114	5134	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0115	5133	1	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0116	5137	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0117	5127	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0118	5128	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0119	5134	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0120	5134	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0121	5134	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0122	5138	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0123	5133	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0124	5135	1	0	0	1	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0125	5135	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0126	5138	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0127	5139	1	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0128	5138	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0129	5114	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0130	5133	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0131	5134	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0132	5134	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0133	5126	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0134	5128	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0135	5127	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0136	5127	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0137	5124	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0138	5128	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0139	5126	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0140	5134	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0141	5130	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0142	5129	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0143	5129	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0144	5128	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0145	5127	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0146	5130	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0147	5136	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0148	5122	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0149	5122	1	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0150	5136	1	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0151	5135	1	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0152	5149	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0153	5148	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	t0154	5134	1	1	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557