JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A1_chr1_211566568_211584161	1/1	t0001	4370	181	15	45	89	8	22	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0002	4370	72	7	8	50	2	5	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0003	4370	66	15	3	38	2	8	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0004	4370	29	26	3	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0005	4370	19	0	1	18	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0006	4370	6	5	1	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0007	4370	6	6	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0008	4366	6	0	2	0	2	2	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0009	4371	5	1	0	4	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0010	4366	4	0	0	4	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0011	4365	4	0	2	0	0	2	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0012	4371	3	0	0	3	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0013	4371	2	1	1	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0014	4371	2	0	0	1	0	1	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0015	4370	2	0	0	0	0	2	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0016	4370	2	2	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0017	4370	2	2	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0018	4370	2	2	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0019	4370	2	0	2	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0020	4370	1	0	0	0	0	1	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0021	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0022	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0023	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0024	4370	1	0	0	0	0	1	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0025	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0026	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0027	4370	1	0	1	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0028	4370	1	0	1	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0029	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0030	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0031	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0032	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0033	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0034	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0035	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0036	4370	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0037	4370	1	0	0	0	1	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0038	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0039	4370	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	t0040	4370	1	0	0	0	1	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A2_chr1_26032252_26051118	0/0	t0001	2131	167	13	35	93	6	20	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0002	2131	37	13	3	15	1	5	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0003	2131	34	4	2	28	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0004	2131	30	10	9	4	1	6	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0005	2131	21	20	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0006	2131	17	13	4	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0007	2131	11	11	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0008	2131	7	0	2	0	4	1	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0009	2116	6	5	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0010	2131	5	3	2	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118