JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A2_chr1_26032252_26051118	0/0	t0011	2131	4	0	0	4	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0012	2131	3	2	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0013	2131	2	0	2	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0014	2129	2	2	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0015	2131	2	0	0	2	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0016	2131	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0017	2131	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0018	2129	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0019	2131	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0020	2131	1	0	0	1	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0021	2131	1	0	0	0	0	1	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0022	2131	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0023	2131	1	0	0	1	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0024	2131	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0025	2131	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0026	2131	1	0	0	0	0	1	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	t0027	2131	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A3_chr2_27248684_27268047	1/0	t0001	1770	114	2	26	68	6	11	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/1	t0002	1766	52	1	17	20	3	10	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0003	1764	24	15	6	0	0	3	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0004	1760	19	13	6	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0005	1772	19	2	5	5	4	3	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0006	1766	14	9	2	0	0	3	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0007	1768	12	8	2	1	1	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0008	1748	10	9	1	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0009	1770	6	0	0	6	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0010	1764	5	4	1	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0011	1774	5	0	2	2	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0012	1770	4	0	1	1	2	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0013	1766	4	0	0	4	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0014	1766	3	3	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0015	1768	3	3	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0016	1770	3	0	0	3	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0017	1758	3	3	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0018	1768	2	2	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0019	1768	2	0	0	1	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0020	1758	2	2	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0021	1770	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0022	1766	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0023	1764	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0024	1760	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0025	1770	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0026	1772	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0027	1770	1	0	1	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0028	1770	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0029	1770	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0030	1768	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0031	1764	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0032	1764	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	t0033	1764	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047