JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A3_chr2_27248684_27268047	0/0	t0034	1764	1	1	0	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A4_chr15_45474606_45527755	1/1	t0001	5821	103	24	21	46	2	8	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0002	5822	51	1	9	39	0	2	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0003	5821	44	2	7	28	1	6	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0004	5820	22	16	4	2	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0005	5820	14	4	5	4	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0006	5823	9	0	4	5	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0007	5823	5	0	0	1	1	3	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0008	5822	4	1	1	0	0	2	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0009	5821	4	4	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0010	5823	4	3	1	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0011	5817	3	0	0	2	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0012	5822	3	3	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0013	5821	3	1	1	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0014	5821	3	3	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0015	5821	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0016	5816	2	0	1	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0017	5821	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0018	5820	2	0	1	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0019	5824	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0020	5825	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0021	5823	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0022	5820	2	2	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0023	5821	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0024	5821	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0025	5821	1	0	0	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0026	5825	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0027	5816	1	0	0	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0028	5822	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0029	5824	1	0	1	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0030	5822	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0031	5823	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0032	5821	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0033	5819	1	0	0	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0034	5820	1	0	1	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0035	5821	1	0	0	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0036	5822	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0037	5821	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0038	5822	1	0	1	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0039	5821	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0040	5822	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0041	5821	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0042	5821	1	0	0	0	0	1	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0043	5823	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0044	5824	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0045	5820	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0046	5820	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0047	5820	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0048	5822	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0049	5821	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755