JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A4_chr15_45474606_45527755	0/0	t0050	5825	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0051	5821	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	t0052	5822	1	1	0	0	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A5_chr5_69089014_69136069	0/0	t0001	1695	140	14	19	91	6	10	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	1/0	t0002	1695	106	14	20	46	4	21	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/1	t0003	1695	75	9	11	44	3	7	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0004	1695	22	20	2	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0005	1695	18	15	3	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0006	1695	15	10	3	0	0	2	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0007	1695	5	0	5	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0008	1695	4	0	4	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0009	1695	3	3	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0010	1695	2	2	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0011	1695	2	2	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0012	1695	2	0	2	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0013	1695	2	2	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0014	1695	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0015	1683	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0016	1695	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0017	1695	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0018	1695	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0019	1695	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0020	1695	1	0	1	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0021	1695	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0022	1695	1	0	0	0	1	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0023	1695	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0024	1695	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	t0025	1695	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A6_chr2_32160864_32229379	0/0	t0001	3704	135	31	29	59	4	12	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	1/0	t0002	3704	97	16	12	55	2	11	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/1	t0003	3704	48	7	8	27	2	3	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0004	3704	31	5	7	19	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0005	3704	14	5	6	0	2	1	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0006	3703	10	10	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0007	3704	5	4	1	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0008	3704	4	0	0	4	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0009	3705	4	4	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0010	3704	3	0	3	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0011	3704	2	0	1	0	1	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0012	3704	2	0	0	0	0	2	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0013	3704	2	0	1	0	1	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0014	3704	2	0	0	2	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0015	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0016	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0017	3704	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0018	3704	1	0	1	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0019	3704	1	0	0	0	0	1	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0020	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0021	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0022	3690	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379