JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A6_chr2_32160864_32229379	0/0	t0023	3704	1	0	0	0	1	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0024	3704	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0025	3704	1	0	0	0	1	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0026	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0027	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0028	3704	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0029	3704	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0030	3704	1	0	1	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	t0031	3704	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A7_chr1_100891090_100986757	0/1	t0001	7070	79	13	11	34	4	16	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0002	7067	27	5	4	12	1	5	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0003	7071	16	2	5	5	2	2	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	1/0	t0004	7074	12	10	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0005	7070	11	0	2	4	4	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0006	7073	8	7	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0007	7066	6	6	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0008	7071	6	2	0	4	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0009	7072	5	1	2	0	0	2	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0010	7071	4	4	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0011	7072	3	3	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0012	7066	2	2	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0013	7066	2	0	0	0	0	2	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0014	7071	2	0	0	1	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0015	7070	2	0	0	2	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0016	7066	2	0	1	1	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0017	7071	2	0	1	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0018	7070	2	0	0	2	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0019	7070	2	0	1	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0020	7058	2	2	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0021	7075	2	1	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0022	7067	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0023	7074	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0024	7070	1	0	0	1	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0025	7071	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0026	7076	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0027	7071	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0028	7071	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0029	7072	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0030	7070	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0031	7070	1	0	0	0	1	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0032	7070	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0033	7069	1	0	0	1	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0034	7071	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0035	7070	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0036	7071	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0037	7072	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0038	7068	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0039	7072	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0040	7068	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0041	7074	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757