JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A7_chr1_100891090_100986757	0/0	t0042	7076	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0043	7076	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0044	7062	1	1	0	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0045	7070	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	t0046	7109	1	0	0	1	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A8_chr8_117129995_117181714	0/0	t0001	4367	71	5	13	45	6	2	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0002	4367	62	2	13	39	1	7	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	1/0	t0003	4367	54	19	6	19	3	6	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/1	t0004	4367	44	29	8	2	0	4	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0005	4367	14	4	0	10	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0006	4367	12	0	6	6	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0007	4367	11	1	4	1	3	2	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0008	4367	8	3	3	0	2	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0009	4368	5	5	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0010	4367	4	4	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0011	4367	4	4	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0012	4367	3	2	1	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0013	4367	3	0	0	3	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0014	4367	3	0	0	3	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0015	4367	3	0	0	3	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0016	4367	2	2	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0017	4367	2	0	0	0	0	2	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0018	4367	2	1	1	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0019	4367	2	0	1	0	0	1	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0020	4367	2	0	0	2	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0021	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0022	4367	1	0	0	1	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0023	4367	1	0	1	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0024	4367	1	0	1	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0025	4367	1	0	0	0	1	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0026	4367	1	0	0	0	0	1	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0027	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0028	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0029	4367	1	0	0	1	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0030	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0031	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0032	4367	1	0	0	0	0	1	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0033	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0034	4382	1	0	0	1	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0035	4367	1	0	0	0	0	1	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0036	4367	1	0	0	0	0	1	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	t0037	4367	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A9_chr4_41985530_42095461	0/0	t0001	4458	44	23	6	6	1	8	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/1	t0002	4460	39	2	11	12	3	10	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0003	4458	15	12	2	0	0	1	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0004	4461	12	12	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0005	4460	8	2	1	3	0	2	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0006	4459	7	0	5	0	1	1	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	1/0	t0007	4458	5	4	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0008	4460	4	4	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461