Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL7A_chr12_122016884_122067044	0/0	t0067	3090	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0068	3092	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0069	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0070	3094	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0071	3093	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0072	3094	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0073	3094	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0074	3094	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0075	3095	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0076	3095	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0077	3093	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0078	3096	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0079	3096	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0080	3096	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0081	3097	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0082	3098	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0083	3099	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0084	3097	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0085	3090	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0086	3091	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0087	3090	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0088	3090	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0089	3090	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0090	3091	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0091	3090	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0092	3090	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0093	3088	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0094	3090	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0095	3090	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0096	3094	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0097	3094	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0098	3092	1	0	0	0	1	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	t0099	3096	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7B_chr7_73531356_73562690	1/1	t0001	1055	220	66	26	92	8	26	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0002	1055	38	0	5	32	0	1	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0003	1055	11	0	3	0	4	4	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0004	1053	5	5	0	0	0	0	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0005	1055	3	3	0	0	0	0	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0006	1055	2	0	2	0	0	0	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0007	1055	2	0	0	0	0	2	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0008	1055	1	0	1	0	0	0	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0009	1055	1	0	0	0	0	1	copy fasta	BCL7B	chr7	73531356	73562690
BCL7B_chr7_73531356_73562690	0/0	t0010	1055	1	0	1	0	0	0	copy fasta	BCL7B	chr7	73531356	73562690
BCL7C_chr16_30882795_30899077	1/1	t0001	204	312	93	60	107	12	38	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	t0002	204	7	1	4	0	2	0	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	t0003	204	5	0	0	5	0	0	copy fasta	BCL7C	chr16	30882795	30899077
BCL9L_chr11_118891136_118930926	0/0	t0001	3102	56	10	9	27	2	8	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/1	t0002	3103	41	24	9	4	2	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0003	3102	24	7	10	0	1	6	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0004	3102	19	1	4	3	1	10	copy fasta	BCL9L	chr11	118891136	118930926