JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC31A2_chr9_113146007_113169140	0/0	t0005	1291	49	1	8	31	3	6	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0006	1295	31	1	2	20	1	7	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0007	1291	14	4	1	8	0	1	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0008	1292	14	0	1	13	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0009	1291	13	13	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0010	1287	6	5	1	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0011	1291	5	2	0	0	0	3	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0012	1291	4	4	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0013	1287	4	1	3	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0014	1291	3	3	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0015	1296	3	0	3	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0016	1290	3	3	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0017	1291	2	2	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0018	1287	2	1	1	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0019	1291	1	1	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0020	1291	1	1	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0021	1291	1	1	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0022	1291	1	0	0	0	1	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC32A1_chr20_38719486_38734372	1/1	t0001	973	413	70	75	198	18	50	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0002	973	6	6	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0003	973	4	4	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0004	973	3	2	1	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0005	973	1	1	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0006	973	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0007	973	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	t0008	973	1	1	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC33A1_chr3_155816024_155859427	0/1	t0001	7618	92	6	24	48	3	10	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	1/0	t0002	7617	52	6	12	21	5	7	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0003	7617	38	0	8	23	2	5	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0004	7616	29	2	7	17	0	3	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0005	7617	15	1	7	4	1	2	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0006	7615	11	11	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0007	7613	8	8	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0008	7618	8	0	0	6	0	2	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0009	7616	7	7	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0010	7615	7	7	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0011	7617	6	4	0	1	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0012	7613	6	2	1	0	1	2	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0013	7613	5	4	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0014	7617	5	0	3	2	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0015	7617	5	1	3	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0016	7618	5	4	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0017	7612	4	3	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0018	7619	4	0	0	4	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0019	7617	4	0	1	3	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0020	7619	3	0	0	2	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0021	7617	3	0	0	0	0	3	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0022	7614	3	3	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0023	7612	3	3	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0024	7612	2	1	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427