JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC33A1_chr3_155816024_155859427	0/0	t0025	7617	2	2	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0026	7618	2	0	0	2	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0027	7618	2	0	0	2	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0028	7612	2	0	1	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0029	7613	2	2	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0030	7617	2	0	0	2	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0031	7617	2	0	0	0	2	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0032	7615	2	0	1	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0033	7617	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0034	7613	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0035	7618	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0036	7615	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0037	7613	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0038	7619	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0039	7618	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0040	7618	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0041	7619	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0042	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0043	7618	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0044	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0045	7617	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0046	7615	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0047	7617	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0048	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0049	7612	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0050	7612	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0051	7614	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0052	7612	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0053	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0054	7614	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0055	7613	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0056	7615	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0057	7617	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0058	7618	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0059	7617	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0060	7617	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0061	7616	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0062	7617	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0063	7618	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0064	7618	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0065	7617	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0066	7617	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0067	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0068	7616	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0069	7618	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0070	7617	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0071	7617	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0072	7613	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0073	7616	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0074	7617	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427