JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC33A1_chr3_155816024_155859427	0/0	t0075	7617	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0076	7616	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0077	7617	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0078	7616	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0079	7616	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0080	7616	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0081	7616	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0082	7613	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	t0083	7617	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC34A1_chr5_177379434_177403848	1/1	t0001	664	418	89	74	189	16	48	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0002	664	7	7	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0003	664	2	2	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0004	664	2	0	0	2	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0005	664	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0006	664	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	t0007	664	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A2_chr4_25650851_25683748	0/0	t0001	2044	119	12	12	87	2	6	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/1	t0002	2044	70	1	14	33	8	13	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0003	2044	37	8	7	20	1	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0004	2042	21	6	10	4	1	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0005	2044	21	0	3	16	0	2	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0006	2042	13	0	5	8	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0007	2042	12	1	6	0	1	4	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0008	2042	11	0	5	0	2	4	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0009	2031	9	9	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0010	2045	8	8	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0011	2042	6	2	2	0	0	2	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0012	2042	6	0	1	3	1	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0013	2043	6	0	1	2	0	3	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0014	2041	5	0	2	0	0	3	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0015	2043	5	0	3	0	0	2	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0016	2044	4	4	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0017	2044	4	0	0	4	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0018	2045	3	0	0	3	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0019	2042	3	3	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0020	2042	3	3	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0021	2044	3	1	1	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0022	2045	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0023	2043	2	0	2	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0024	2045	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0025	2042	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0026	2042	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0027	2044	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0028	2042	2	0	0	0	0	2	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0029	2044	2	0	0	0	0	2	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0030	2044	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0031	2044	2	1	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0032	2045	2	2	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0033	2045	2	0	0	2	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0034	2045	2	0	0	2	0	0	copy fasta	SLC34A2	chr4	25650851	25683748