JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC34A2_chr4_25650851_25683748	0/0	t0035	2044	2	1	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0036	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0037	2044	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0038	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0039	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0040	2043	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0041	2044	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0042	2044	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0043	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0044	2045	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0045	2042	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0046	2044	1	0	0	0	0	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0047	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0048	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0049	2042	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0050	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0051	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0052	2042	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0053	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0054	2043	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0055	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0056	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0057	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	1/0	t0058	2043	1	0	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0059	2044	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0060	2045	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0061	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0062	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0063	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0064	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0065	2042	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0066	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0067	2044	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0068	2044	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0069	2044	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0070	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0071	2015	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	t0072	2045	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A3_chr9_137225901_137241555	1/0	t0001	217	310	61	59	142	12	35	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/1	t0002	217	107	31	21	38	5	11	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	t0003	217	1	1	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	t0004	217	1	0	0	0	1	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	t0005	217	1	1	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC35A1_chr6_87467974_87517336	0/1	t0001	845	132	63	25	33	2	8	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	1/0	t0002	841	129	8	25	71	6	18	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0003	849	104	4	25	59	4	12	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0004	845	11	11	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0005	845	9	1	3	3	1	1	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0006	845	5	1	0	4	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0007	841	3	1	0	1	0	1	copy fasta	SLC35A1	chr6	87467974	87517336