JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35A1_chr6_87467974_87517336	0/0	t0008	845	1	1	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0009	841	1	0	0	0	1	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0010	929	1	0	0	1	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0011	841	1	0	0	1	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	t0012	841	1	0	0	1	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A2_chrX_48898183_48916646	1/1	t0001	266	294	76	56	125	11	24	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	t0002	268	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A3_chr1_99964996_100040634	1/1	t0001	13344	30	12	5	4	2	5	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0002	13344	27	0	8	18	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0003	13347	10	2	2	3	0	3	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0004	13344	7	0	2	4	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0005	13344	6	0	0	5	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0006	13345	3	0	0	1	0	2	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0007	13345	3	1	0	2	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0008	13350	3	2	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0009	13346	3	3	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0010	13357	3	3	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0011	13355	3	3	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0012	13352	3	3	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0013	13322	2	0	1	0	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0014	13344	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0015	13345	2	0	1	0	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0016	13352	2	1	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0017	13352	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0018	13346	2	0	0	2	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0019	13347	2	0	0	2	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0020	13345	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0021	13343	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0022	13344	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0023	13344	2	2	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0024	13322	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0025	13322	1	0	0	0	1	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0026	13347	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0027	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0028	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0029	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0030	13343	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0031	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0032	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0033	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0034	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0035	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0036	13344	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0037	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0038	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0039	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0040	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0041	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0042	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0043	13345	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634