JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35A3_chr1_99964996_100040634	0/0	t0044	13345	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0045	13346	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0046	13347	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0047	13346	1	0	0	0	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0048	13351	1	0	0	0	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0049	13345	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0050	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0051	13344	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0052	13344	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0053	13344	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0054	13350	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0055	13351	1	0	0	0	1	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0056	13350	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0057	13348	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0058	13348	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0059	13348	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0060	13347	1	0	0	0	0	1	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0061	13347	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0062	13347	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0063	13348	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0064	13347	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0065	13348	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0066	13348	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0067	13348	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0068	13347	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0069	13356	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0070	13357	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0071	13357	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0072	13346	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0073	13358	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0074	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0075	13354	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0076	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0077	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0078	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0079	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0080	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0081	13356	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0082	13351	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0083	13352	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0084	13344	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0085	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0086	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0087	13343	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0088	13356	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0089	13355	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0090	13357	1	0	0	1	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0091	13352	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	t0092	13354	1	0	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A4_chr5_140559828_140574100	1/1	t0001	1692	278	51	48	146	12	19	copy fasta	SLC35A4	chr5	140559828	140574100