JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35A4_chr5_140559828_140574100	0/0	t0002	1692	118	42	18	37	6	15	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0003	1692	2	0	0	2	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0004	1692	2	2	0	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0005	1692	2	2	0	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0006	1692	1	0	0	0	0	1	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0007	1692	1	0	0	0	0	1	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0008	1692	1	0	1	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0009	1692	1	1	0	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0010	1692	1	0	1	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	t0011	1692	1	0	0	1	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A5_chr3_112557045_112590579	0/1	t0001	3093	164	25	26	91	7	14	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0002	3093	85	41	8	34	0	2	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0003	3093	30	0	12	11	2	5	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0004	3093	22	0	9	12	1	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	1/0	t0005	3092	13	8	0	4	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0006	3093	13	7	1	0	0	5	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0007	3093	6	0	4	0	2	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0008	3093	4	0	4	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0009	3093	4	3	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0010	3092	3	0	0	0	0	3	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0011	3093	2	0	0	0	0	2	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0012	3092	2	0	0	0	0	2	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0013	3093	2	0	0	2	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0014	3093	2	2	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0015	3093	2	2	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0016	3093	1	0	0	1	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0017	3092	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0018	3093	1	0	0	0	1	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0019	3093	1	0	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0020	3093	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0021	3093	1	0	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0022	3053	1	0	0	0	0	1	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0023	3093	1	0	0	1	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0024	3093	1	0	0	0	0	1	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0025	3093	1	0	0	0	1	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0026	3092	1	0	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0027	3093	1	0	0	1	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0028	3093	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0029	3093	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0030	3093	1	0	0	1	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0031	3092	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0032	3093	1	0	0	0	0	1	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	t0033	3093	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35B1_chr17_49695943_49712964	1/0	t0001	647	359	73	73	167	10	35	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	t0002	647	43	12	5	21	2	3	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	t0003	646	10	9	1	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	t0004	647	2	2	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	t0005	647	1	1	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	t0006	647	1	1	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/1	t0007	647	1	0	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964