JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35B1_chr17_49695943_49712964	0/0	t0008	647	1	0	1	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B2_chr6_44249101_44262528	0/1	t0001	726	247	70	38	95	11	32	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	1/0	t0002	724	110	21	26	45	5	12	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0003	726	62	1	9	51	0	1	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0004	726	10	0	5	4	0	1	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0005	726	1	1	0	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0006	724	1	1	0	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0007	726	1	1	0	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0008	726	1	0	0	1	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	t0009	726	1	1	0	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B3_chr6_8406435_8440545	1/1	t0001	2411	304	47	45	168	10	32	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0002	2411	21	11	9	0	0	1	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0003	2411	21	8	7	0	1	5	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0004	2411	17	0	1	12	0	4	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0005	2412	12	10	2	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0006	2411	6	6	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0007	2411	5	0	2	0	1	2	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0008	2411	4	4	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0009	2411	3	0	1	0	0	2	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0010	2411	2	0	0	1	1	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0011	2411	2	0	2	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0012	2411	2	2	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0013	2411	2	0	2	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0014	2411	2	0	0	2	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0015	2411	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0016	2411	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0017	2411	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0018	2411	1	0	0	0	1	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0019	2411	1	0	1	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0020	2411	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0021	2411	1	0	0	1	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0022	2412	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	t0023	2412	1	1	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B4_chr7_134284332_134321930	0/0	t0001	5681	144	21	24	78	7	14	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0002	5687	66	6	15	28	6	11	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0003	5687	48	28	3	16	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0004	5687	6	5	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0005	5682	5	5	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0006	5681	5	0	0	5	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0007	5683	4	3	1	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0008	5680	4	2	1	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0009	5687	3	1	2	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0010	5687	3	0	0	3	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0011	5682	3	0	0	3	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0012	5698	2	0	2	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0013	5698	2	2	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0014	5681	2	2	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0015	5681	2	0	0	0	2	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0016	5681	2	0	0	2	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0017	5688	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930