Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL9L_chr11_118891136_118930926	0/0	t0005	3103	16	11	2	1	0	2	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0006	3102	15	10	1	2	0	2	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0007	3102	15	2	0	13	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0008	3106	13	1	3	6	1	2	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0009	3102	8	8	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0010	3106	6	6	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0011	3102	6	0	2	3	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0012	3102	5	5	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0013	3102	3	0	2	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0014	3107	3	2	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0015	3102	2	0	0	2	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0016	3099	2	2	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0017	3102	2	2	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0018	3103	2	0	2	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0019	3103	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0020	3102	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0021	3087	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0022	3103	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0023	3106	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0024	3106	1	0	0	0	1	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0025	3103	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0026	3102	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0027	3102	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0028	3102	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	t0029	3103	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	1/0	t0030	3099	1	0	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9_chr1_147536501_147631216	1/0	t0001	1909	63	2	15	31	8	6	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0002	1909	42	8	7	21	2	4	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0003	1909	39	4	4	31	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0004	1909	36	0	4	29	1	2	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0005	1909	29	2	8	18	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0006	1909	21	20	1	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0007	1909	15	5	4	0	2	4	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0008	1909	14	14	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0009	1909	14	12	2	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0010	1909	8	1	2	4	1	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0011	1909	6	2	0	0	1	3	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/1	t0012	1909	5	1	1	0	0	2	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0013	1909	3	0	0	3	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0014	1909	3	3	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0015	1909	2	2	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0016	1909	2	2	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0017	1909	2	0	0	0	1	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0018	1909	1	0	1	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0019	1909	1	0	1	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0020	1909	1	0	0	0	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0021	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0022	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0023	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0024	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216