JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35B4_chr7_134284332_134321930	0/0	t0018	5682	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0019	5688	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0020	5681	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0021	5687	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0022	5681	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0023	5685	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0024	5687	1	0	1	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0025	5687	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0026	5687	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0027	5687	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0028	5687	1	0	1	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0029	5687	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0030	5687	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0031	5687	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0032	5687	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0033	5686	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0034	5686	1	0	1	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0035	5686	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0036	5686	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0037	5688	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0038	5687	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0039	5682	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0040	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0041	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0042	5681	1	0	0	0	1	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0043	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0044	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0045	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0046	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0047	5681	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0048	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0049	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0050	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0051	5681	1	0	1	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0052	5681	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0053	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0054	5681	1	0	0	0	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0055	5682	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0056	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	t0057	5681	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35C1_chr11_45800149_45818016	0/0	t0001	2335	94	16	10	62	0	6	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0002	2335	77	6	27	25	6	13	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0003	2335	28	0	0	26	0	2	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0004	2335	24	0	8	14	1	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	1/0	t0005	2335	24	0	0	22	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/1	t0006	2335	23	1	10	2	4	5	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0007	2335	20	15	2	1	0	2	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0008	2335	18	11	5	1	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0009	2335	16	0	2	13	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0010	2335	13	0	0	1	1	11	copy fasta	SLC35C1	chr11	45800149	45818016