JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35C1_chr11_45800149_45818016	0/0	t0011	2335	12	12	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0012	2335	11	1	5	0	4	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0013	2335	7	7	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0014	2335	6	0	1	3	2	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0015	2335	6	0	1	5	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0016	2335	6	1	0	5	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0017	2335	5	5	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0018	2335	4	0	0	4	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0019	2335	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0020	2335	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0021	2335	3	1	2	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0022	2335	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0023	2335	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0024	2335	2	0	2	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0025	2335	2	2	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0026	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0027	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0028	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0029	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0030	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0031	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0032	2335	1	0	0	0	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0033	2335	1	0	0	0	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0034	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0035	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0036	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0037	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0038	2335	1	1	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0039	2335	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	t0040	2335	1	0	1	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C2_chr20_46340984_46369425	0/0	t0001	4721	111	4	25	65	4	13	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0002	4723	53	8	2	42	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0003	4721	46	1	16	16	2	11	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0004	4723	34	1	10	15	4	4	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0005	4722	18	7	4	1	1	5	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0006	4721	13	13	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0007	4723	10	10	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0008	4723	8	7	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0009	4699	8	6	2	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0010	4723	7	0	0	7	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0011	4723	7	7	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0012	4722	5	0	0	4	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0013	4721	5	0	3	2	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0014	4724	4	4	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0015	4724	4	4	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0016	4722	3	1	1	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0017	4721	2	0	1	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/1	t0018	4721	2	0	0	0	1	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0019	4722	2	1	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	1/0	t0020	4723	2	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425