JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35C2_chr20_46340984_46369425	0/0	t0021	4723	2	0	1	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0022	4724	2	0	0	2	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0023	4723	2	0	0	2	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0024	4723	2	0	0	0	0	2	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0025	4721	2	0	0	0	2	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0026	4721	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0027	4721	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0028	4722	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0029	4722	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0030	4721	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0031	4721	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0032	4722	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0033	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0034	4721	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0035	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0036	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0037	4722	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0038	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0039	4721	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0040	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0041	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0042	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0043	4721	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0044	4723	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0045	4722	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0046	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0047	4722	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0048	4722	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0049	4721	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0050	4722	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0051	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0052	4721	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0053	4722	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0054	4724	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0055	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0056	4723	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0057	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0058	4723	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0059	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0060	4724	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0061	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0062	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0063	4724	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0064	4723	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0065	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0066	4721	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0067	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0068	4723	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	t0069	4723	1	1	0	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35D1_chr1_66994350_67059148	0/1	t0001	5126	76	18	14	39	1	3	copy fasta	SLC35D1	chr1	66994350	67059148