JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35D1_chr1_66994350_67059148	1/0	t0002	5126	70	2	15	37	3	12	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0003	5124	47	32	7	5	1	2	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0004	5127	27	7	5	8	4	3	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0005	5127	20	0	4	14	0	2	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0006	5126	11	1	4	2	2	2	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0007	5126	8	8	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0008	5124	5	5	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0009	5127	3	1	2	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0010	5127	3	3	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0011	5123	3	3	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0012	5124	2	2	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0013	5126	2	0	1	0	1	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0014	5127	2	0	1	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0015	5127	2	0	2	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0016	5126	2	2	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0017	5126	2	0	0	2	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0018	5127	2	2	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0019	5126	2	2	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0020	5126	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0021	5128	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0022	5126	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0023	5126	1	0	0	0	0	1	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0024	5128	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0025	5126	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0026	5126	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0027	5125	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0028	5126	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0029	5126	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0030	5126	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0031	5126	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0032	5127	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0033	5124	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0034	5124	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0035	5125	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0036	5124	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0037	5126	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0038	5126	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0039	5127	1	0	0	0	0	1	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	t0040	5127	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D2_chr9_96315710_96388711	1/1	t0001	610	280	78	50	110	14	26	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	t0002	610	2	2	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	t0003	610	2	0	0	2	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D3_chr6_136917301_136930660	0/0	t0001	1093	274	53	59	134	11	17	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	1/1	t0002	1093	153	37	25	63	5	21	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0003	1091	6	0	0	3	0	3	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0004	1093	5	5	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0005	1093	3	0	0	0	0	3	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0006	1093	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0007	1093	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	t0008	1093	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660