JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E1_chr19_16544837_16577415	1/1	t0001	3894	160	27	36	73	5	17	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0002	3893	48	31	2	7	1	7	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0003	3892	33	5	9	13	1	5	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0004	3895	17	1	0	14	0	2	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0005	3893	12	2	2	4	1	3	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0006	3893	12	0	11	0	0	1	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0007	3893	11	0	1	10	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0008	3894	7	0	0	7	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0009	3888	7	4	2	0	1	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0010	3893	4	4	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0011	3892	4	4	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0012	3894	3	0	1	0	0	2	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0013	3892	2	0	0	0	0	2	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0014	3892	2	0	0	2	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0015	3888	1	0	0	0	0	1	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0016	3892	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0017	3893	1	0	1	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0018	3894	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0019	3894	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0020	3892	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0021	3893	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0022	3895	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0023	3894	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0024	3894	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0025	3894	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0026	3894	1	0	1	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0027	3894	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0028	3894	1	0	1	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0029	3892	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0030	3892	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0031	3892	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0032	3892	1	0	1	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0033	3892	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0034	3892	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0035	3893	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0036	3894	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0037	3894	1	0	0	0	1	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0038	3894	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0039	3895	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0040	3893	1	1	0	0	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0041	3884	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	t0042	3894	1	0	0	1	0	0	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E2B_chr1_1656478_1697795	0/0	t0001	5217	41	8	10	21	0	2	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0002	5195	36	0	3	30	0	3	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0003	5217	24	7	2	11	0	4	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0004	5217	21	0	4	12	1	4	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0005	5195	19	1	0	18	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0006	5217	14	2	6	2	0	4	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0007	5217	14	1	4	3	4	2	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0008	5212	10	1	4	4	1	0	copy fasta	SLC35E2B	chr1	1656478	1697795