JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E2B_chr1_1656478_1697795	0/0	t0109	5216	1	1	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0110	5195	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	t0111	5216	1	0	1	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E3_chr12_68741176_68786468	0/0	t0001	16794	14	0	4	5	4	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0002	16778	8	0	2	5	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0003	16798	8	2	0	6	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0004	16795	7	0	1	3	0	3	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0005	16786	7	0	0	4	1	2	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0006	16779	7	0	0	7	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0007	16787	6	0	0	3	0	3	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0008	16786	6	0	0	4	0	2	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0009	16804	6	0	2	2	2	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0010	16795	5	1	1	3	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0011	16803	5	0	1	4	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0012	16780	4	0	0	4	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0013	16778	4	0	0	4	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0014	16799	4	0	1	1	0	2	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0015	16796	3	1	1	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0016	16793	3	0	1	1	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0017	16801	3	0	0	2	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0018	16788	3	0	0	3	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0019	16788	3	0	1	1	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0020	16788	3	0	0	3	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0021	16773	3	0	3	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0022	16787	3	0	0	2	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0023	16782	3	0	0	3	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0024	16780	3	0	2	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0025	16813	3	3	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0026	16751	2	2	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0027	16796	2	0	0	1	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0028	16794	2	1	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0029	16774	2	2	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0030	16767	2	2	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0031	16767	2	2	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0032	16802	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0033	16785	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0034	16786	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0035	16787	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0036	16775	2	1	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0037	16752	2	1	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0038	16788	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0039	16785	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0040	16780	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0041	16766	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0042	16805	2	0	1	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0043	16805	2	0	0	0	0	2	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0044	16780	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0045	16806	2	0	1	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0046	16805	2	0	1	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0047	16804	2	0	2	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468