JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E3_chr12_68741176_68786468	0/0	t0098	16767	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0099	16768	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0100	16768	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0101	16766	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0102	16765	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0103	16765	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0104	16768	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0105	16763	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0106	16815	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0107	16818	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0108	16785	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0109	16804	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0110	16790	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0111	16789	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0112	16788	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0113	16787	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0114	16786	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0115	16788	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0116	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0117	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0118	16804	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0119	16788	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0120	16789	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0121	16774	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0122	16788	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0123	16789	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0124	16786	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0125	16803	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0126	16802	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0127	16802	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0128	16789	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0129	16789	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0130	16811	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/1	t0131	16786	1	0	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0132	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0133	16785	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0134	16784	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0135	16785	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0136	16787	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0137	16786	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0138	16788	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0139	16786	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0140	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0141	16805	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0142	16789	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0143	16790	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0144	16789	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0145	16774	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0146	16773	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0147	16774	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468