Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL9_chr1_147536501_147631216	0/0	t0025	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0026	1909	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0027	1909	1	0	0	1	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0028	1909	1	0	0	0	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	t0029	1909	1	0	0	0	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCLAF1_chr6_136251627_136294846	0/1	t0001	4726	100	20	25	45	1	8	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0002	4730	44	20	7	13	1	3	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0003	4734	24	4	7	10	0	3	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0004	4742	15	0	1	13	1	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0005	4730	13	0	0	13	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0006	4738	13	0	4	7	0	2	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0007	4726	8	7	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0008	4711	5	0	0	5	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0009	4710	5	5	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0010	4726	4	0	0	4	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0011	4720	4	0	2	1	0	1	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0012	4710	4	0	0	4	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0013	4718	4	0	0	4	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0014	4726	3	1	2	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0015	4726	3	3	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	1/0	t0016	4732	3	0	2	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0017	4736	3	0	0	3	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0018	4720	2	1	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0019	4704	2	2	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0020	4704	2	2	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0021	4724	2	0	1	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0022	4720	2	1	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0023	4738	2	0	1	0	1	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0024	4722	2	0	1	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0025	4726	2	2	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0026	4738	2	0	0	2	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0027	4710	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0028	4726	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0029	4731	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0030	4726	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0031	4720	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0032	4710	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0033	4718	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0034	4708	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0035	4730	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0036	4730	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0037	4726	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0038	4724	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0039	4730	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0040	4726	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0041	4730	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0042	4738	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0043	4746	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0044	4734	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0045	4738	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846