JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E3_chr12_68741176_68786468	0/0	t0148	16791	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0149	16813	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0150	16804	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0151	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0152	16786	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0153	16788	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0154	16784	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0155	16806	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0156	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0157	16811	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0158	16785	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0159	16788	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0160	16770	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0161	16805	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0162	16794	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0163	16801	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0164	16801	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0165	16800	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0166	16781	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0167	16779	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0168	16782	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	1/0	t0169	16781	1	0	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0170	16783	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0171	16787	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0172	16782	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0173	16753	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0174	16805	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0175	16804	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0176	16754	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0177	16753	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0178	16753	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0179	16754	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0180	16752	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0181	16757	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0182	16786	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0183	16787	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0184	16754	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0185	16753	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0186	16753	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0187	16751	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0188	16784	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0189	16782	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0190	16781	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0191	16805	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0192	16781	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0193	16780	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0194	16779	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0195	16779	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0196	16781	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0197	16779	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468