JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E3_chr12_68741176_68786468	0/0	t0248	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0249	16796	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0250	16778	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0251	16804	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0252	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0253	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0254	16806	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0255	16801	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0256	16782	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0257	16784	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0258	16780	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0259	16777	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0260	16801	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0261	16801	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0262	16781	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0263	16800	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0264	16799	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0265	16778	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0266	16800	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0267	16801	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0268	16801	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0269	16783	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0270	16781	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0271	16779	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0272	16775	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0273	16798	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0274	16800	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0275	16801	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0276	16801	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0277	16800	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0278	16799	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0279	16799	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0280	16799	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0281	16799	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0282	16798	1	0	0	0	1	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0283	16799	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0284	16778	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0285	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0286	16799	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0287	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0288	16796	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0289	16796	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0290	16799	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0291	16798	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0292	16778	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0293	16797	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0294	16798	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0295	16796	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0296	16782	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0297	16788	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468