JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35E3_chr12_68741176_68786468	0/0	t0298	16813	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0299	16811	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0300	16814	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0301	16814	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0302	16811	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0303	16773	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0304	16764	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0305	16776	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0306	16782	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0307	16782	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0308	16782	1	0	1	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0309	16776	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	t0310	16819	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E4_chr22_30630781_30652893	1/1	t0001	1533	155	2	26	94	6	25	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0002	1532	100	22	31	31	7	9	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0003	1532	80	9	10	59	1	1	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0004	1532	32	28	3	0	0	1	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0005	1532	11	10	1	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0006	1533	8	0	2	2	0	4	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0007	1533	8	8	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0008	1533	7	3	3	0	1	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0009	1533	4	4	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0010	1533	3	0	0	3	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0011	1533	3	0	1	1	1	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0012	1533	2	0	0	0	0	2	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0013	1532	2	1	1	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0014	1532	1	1	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0015	1533	1	0	0	0	0	1	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0016	1533	1	1	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0017	1533	1	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0018	1532	1	0	0	0	0	1	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0019	1533	1	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0020	1532	1	1	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0021	1533	1	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	t0022	1532	1	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35F1_chr6_117902264_118322671	0/0	t0001	3882	20	9	4	6	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0002	3882	18	0	5	13	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0003	3882	14	0	3	3	0	8	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0004	3882	13	5	2	3	0	3	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0005	3883	9	4	2	0	0	3	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0006	3881	7	5	2	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0007	3880	7	2	2	1	0	2	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0008	3882	5	5	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0009	3882	5	0	1	4	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0010	3882	4	3	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0011	3883	4	1	0	3	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0012	3883	3	3	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0013	3882	3	0	0	3	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0014	3883	3	3	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0015	3881	3	1	0	1	1	0	copy fasta	SLC35F1	chr6	117902264	118322671